EMBnet Norway

MRS DATABASES

MRS is the new database sequence search application for EMBnet Norway. You can access it here.

Public FTP Server

You can get selected raw files from our public FTP server by command line: ftp ftp.no.embnet.org (username: ftp password: your email address). You can also point your web browser to ftp://ftp.no.embnet.org , in order to browse the available datasets, using the same username and password. However, due to the size of the files, if you wish to get a file(s), remember to right click and 'Save As' instead of just left clicking.

EMBOSS DATABASES

Note: EMBOSS and BLAST databases are located now only on cnkeeper.uio.no
NameTypeIDQryAllComment
sprotPOK OK OK UniProtKB/Swiss-Prot Latest Release
tremblPOK OK OK UniProtKB/TrEMBL Latest Release
conNOK OK OK EMBL 112 CONSTRUCTED sequences
emblnewNOK OK OK New EMBL sequences since release 112(base 105) -- weekly update
envNOK OK OK EMBL 112 STANDARD ENVIRONMENTAL sequences
estenvNOK OK OK EMBL 112 STANDARD EST ENVIRONMENTAL sequences
estfunNOK OK OK EMBL 112 STANDARD EST FUNGAL sequences
esthumNOK OK OK EMBL 112 STANDARD EST HUMAN sequences
estinvNOK OK OK EMBL 112 STANDARD EST INVERTEBRATE sequences
estmamNOK OK OK EMBL 112 STANDARD EST MAMMALIAN sequences
estmusNOK OK OK EMBL 112 STANDARD EST MUS MUSCULUS sequences
estplnNOK OK OK EMBL 112 STANDARD EST PLANT sequences
gssNOK OK OK EMBL 112 GSS sequences
htcNOK OK OK EMBL 112 STANDARD High Throughput cDNA (HTC) sequences
htgenvNOK OK OK EMBL 112 High Throughput Genome (HTG) ENVIRONMENTAL sequences
htgfunNOK OK OK EMBL 112 High Throughput Genome (HTG) FUNGAL sequences
htghumNOK OK OK EMBL 112 High Throughput Genome (HTG) HUMAN sequences
htginvNOK OK OK EMBL 112 High Throughput Genome (HTG) INVERTEBRATE sequences
htgmamNOK OK OK EMBL 112 High Throughput Genome (HTG) OTHER MAMMAL sequences
htgmusNOK OK OK EMBL 112 High Throughput Genome (HTG) MUS MUSCULUS sequences
htgphgNOK OK OK EMBL 112 High Throughput Genome (HTG) PHAGE sequences
htgplnNOK OK OK EMBL 112 High Throughput Genome (HTG) PLANT sequences
htgproNOK OK OK EMBL 112 High Throughput Genome (HTG) PROKARYOTE sequences
htgrodNOK OK OK EMBL 112 High Throughput Genome (HTG) RODENT sequences
htgvrlNOK OK OK EMBL 112 High Throughput Genome (HTG) VIRAL sequences
htgvrtNOK OK OK EMBL 112 High Throughput Genome (HTG) VERTEBRATE sequences
humanNOK OK OK EMBL 112 STANDARD human sequences
invNOK OK OK EMBL 112 STANDARD Invertebrate Sequences
mammalNOK OK OK EMBL 112 STANDARD other mammal sequences
musNOK OK OK EMBL 112 STANDARD mus musculus sequences
phgNOK OK OK EMBL 112 STANDARD Bacteriophage Sequences
plantsNOK OK OK EMBL 112 STANDARD plant sequences
prokaryoticNOK OK OK EMBL 112 STANDARD prokaryotic sequences
rodentNOK OK OK EMBL 112 STANDARD rodent sequences
stsNOK OK OK EMBL 112 STANDARD STS sequences
viralNOK OK OK EMBL 112 STANDARD viral sequences
wgsenvNOK OK OK EMBL 112 environmental sample Whole Genome Shotgun (WGS) sequences
wgshumNOK OK OK EMBL 112 human Whole Genome Shotgun (WGS) sequences
wgsinvNOK OK OK EMBL 112 invertebrate Whole Genome Shotgun (WGS) sequences
wgsmamNOK OK OK EMBL 112 mammal Whole Genome Shotgun (WGS) sequences
wgsmusNOK OK OK EMBL 112 mus musculus Whole Genome Shotgun (WGS) sequences
wgsplnNOK OK OK EMBL 112 plant Whole Genome Shotgun (WGS) sequences
wgsproNOK OK OK EMBL 112 prokaryotic Whole Genome Shotgun (WGS) sequences
wgsrodNOK OK OK EMBL 112 rodent Whole Genome Shotgun (WGS) sequences
wgsvrtNOK OK OK EMBL 112 vertebrate Whole Genome Shotgun (WGS) sequences


NCBI Formatted (BLAST) Databases

Note: Some of the database sets are not available on wwwblast due to the size of the data set. These large data sets are available on NCBI Blast only through the command line interface to registered users.
NameTypeon wwwblastComment
emblnewnucleotideyesNew EMBL sequences since release 112 -- daily update
human_genomicnucleotideyeshuman RefSeq chromosome records with gap adjusted concatenated NT_ contigs
ntnucleotideyesentries from all traditional divisions of GenBank, EMBL, and DDBJ excluding bulk divisions (gss, sts, pat, est, htg divisions) and wgs entries.
refseq_genomicnucleotidenoGenomic NCBI Reference Sequences
refseq_rnanucleotidenoRNA NCBI Reference Sequences
refseq_proteinproteinnoProtein NCBI Reference sequences
swissprotproteinyesUniProtKB/Swiss-Prot
nrproteinyesnon-redundant protein sequence database with entries from GenPept, Swissprot, PIR, PDF, PDB, and RefSeq
tremblproteinnoUniProtKB/TrEMBL
Last NCBI BLAST Update: 02/08/2012

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